If you'll notice, at the part where Samus finds the lab with all the metroids, they do not attack her. They instead go after the SA-X. It is often theorized that the reason they don't go after fusion-Samus is because of her part-metroid physiology due to vaccine, and they perhaps think she is one of them.
Taken from the metroid wikia, it says as one of the trivia notes toward the bottom: "Certain aspects of this game are similar to to the movie Alien Resurrection. The main character has DNA of the antagonist alien species (Ripley has Alien DNA and Samus has Metroid DNA), members of the normally hostile alien species don't attack the main character due to their possibly thinking that the main character is one of them, and in the beginning Samus says that she was "reborn". "
What boggles me is if the metroids think she's one of them, then why did the Omega Metroid attack her (since it is a metroid)? I mean we all know that Metroids are the only species that cannot possibly be infected by the X parasite, so it's not possible that an X infection would cause it to attack.
Taken from the metroid wikia, it says as one of the trivia notes toward the bottom: "Certain aspects of this game are similar to to the movie Alien Resurrection. The main character has DNA of the antagonist alien species (Ripley has Alien DNA and Samus has Metroid DNA), members of the normally hostile alien species don't attack the main character due to their possibly thinking that the main character is one of them, and in the beginning Samus says that she was "reborn". "
What boggles me is if the metroids think she's one of them, then why did the Omega Metroid attack her (since it is a metroid)? I mean we all know that Metroids are the only species that cannot possibly be infected by the X parasite, so it's not possible that an X infection would cause it to attack.
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