You can't skip anything in Fusion. Even if you had the ability to, the game's structure would screw you over and mess up the order of events, likely ultimately getting you stuck somewhere with no hope of escape (eg, the TRO trap).
Yeah, I guess it wouldn't work. Hey nate, did you just decide it was event++ based on things like the tro trap with cheats, or did you actually see something like that in the code?
it would be interesting, though, to do what the above poster said, because you would get space jump from nettori (and, i assume, reactivate the main power).
unfortunately, i think the fun would end at the final boss, where you wouldn't get the ice beam unless you were actually going through and doing every event up to that point (i.e. killing every boss and going into every security room).